Shimoyama, Mary: search on Z-Library

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1

The Chinchilla Research Resource Database: resource for an otolaryngology disease model

Shimoyama, Mary, Smith, Jennifer R., De Pons, Jeff, Tutaj, Marek, Khampang, Pawjai, Hong, Wenzhou, Erbe, Christy B., Ehrlich, Garth D., Bakaletz, Lauren O., Kerschner, Joseph E.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.03 MB

english, 2016

2

The Disease Portals, disease–gene annotation and the RGD disease ontology at the Rat Genome Database

Hayman, G. Thomas, Laulederkind, Stanley J. F., Smith, Jennifer R., Wang, Shur-Jen, Petri, Victoria, Nigam, Rajni, Tutaj, Marek, De Pons, Jeff, Dwinell, Melinda R., Shimoyama, Mary

Journal:

Year:

2016

Language:

english

File:

PDF, 1.71 MB

english, 2016

3

Multiscale Modeling and Data Integration in the Virtual Physiological Rat Project

Beard, Daniel A., Neal, Maxwell L., Tabesh-Saleki, Nazanin, Thompson, Christopher T., Bassingtwaighte, James B., Shimoyama, Mary, Carlson, Brian E.

Journal:

Annals of Biomedical Engineering

Year:

2012

Language:

english

File:

PDF, 2.30 MB

english, 2012

4

2015 Guidelines for Establishing Genetically Modified Rat Models for Cardiovascular Research

Flister, Michael J., Prokop, Jeremy W., Lazar, Jozef, Shimoyama, Mary, Dwinell, Melinda, Geurts, Aron

Journal:

Journal of Cardiovascular Translational Research

Year:

2015

Language:

english

File:

PDF, 252 KB

english, 2015

5

Structural libraries of protein models for multiple species to understand evolution of the renin-angiotensin system

Prokop, Jeremy W., Petri, Victoria, Shimoyama, Mary E., Watanabe, Ingrid K.M., Casarini, Dulce E., Leeper, Thomas C., Bilinovich, Stephanie M., Jacob, Howard J., Santos, Robson A.S., Martins, Almir S.

Journal:

General and Comparative Endocrinology

Year:

2015

Language:

english

File:

PDF, 3.91 MB

english, 2015

6

The pathway ontology – updates and applications

Petri, Victoria, Jayaraman, Pushkala, Tutaj, Marek, Hayman, G, Smith, Jennifer R, De Pons, Jeff, Laulederkind, Stanley JF, Lowry, Timothy F, Nigam, Rajni, Wang, Shur-Jen, Shimoyama, Mary, Dwinell, Mel

Journal:

Journal of Biomedical Semantics

Year:

2014

Language:

english

File:

PDF, 872 KB

english, 2014

7

Quantitative phenotype analysis to identify, validate and compare rat disease models

Zhao, Yiqing, Smith, Jennifer R, Wang, Shur-Jen, Dwinell, Melinda R, Shimoyama, Mary

Journal:

Year:

2019

File:

PDF, 7.59 MB

2019

8

The Rat Genome Database Curators: Who, What, Where, Why

Shimoyama, Mary, Hayman, G. Thomas, Laulederkind, Stanley J. F., Nigam, Rajni, Lowry, Timothy F., Petri, Victoria, Smith, Jennifer R., Wang, Shur-Jen, Munzenmaier, Diane H., Dwinell, Melinda R., Twigg

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 1005 KB

english, 2009

9

Multiple Ontologies for Integrating Complex Phenotype Datasets

Shimoyama, Mary, Dwinell, Melinda, Jacob, Howard

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 238 KB

2009

10

[Methods in Molecular Biology] Rat Genomics Volume 2018 || The Rat: A Model Used in Biomedical Research

Hayman, G. Thomas, Smith, Jennifer R., Dwinell, Melinda R., Shimoyama, Mary

Year:

2019

Language:

english

File:

PDF, 596 KB

english, 2019

11

Multiple Ontologies for Integrating Complex Phenotype Datasets

Shimoyama, Mary, Dwinell, Melinda, Jacob, Howard

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 238 KB

2009

12

Clinical diagnostic whole genome sequencing in a paediatric population: experience from our WGS genetics clinic

Elizabeth Worthey, David Bick, David Dimmock, Mary Shimoyama…

Journal:

BMC Proceedings

Year:

2012

Language:

english

File:

PDF, 83 KB

english, 2012

13

Designing behavioral self-regulation application for preventive personal mental healthcare

Hirano, Mari, Ogura, Kanako, Kitahara, Mizuho, Sakamoto, Daisuke, Shimoyama, Haruhiko

Journal:

Health Psychology Open

Year:

2017

Language:

english

File:

PDF, 492 KB

english, 2017

14

Disease Ontology: improving and unifying disease annotations across species

Bello, Susan M., Shimoyama, Mary, Mitraka, Elvira, Laulederkind, Stanley J. F., Smith, Cynthia L., Eppig, Janan T., Schriml, Lynn M.

Journal:

Disease Models & Mechanisms

Year:

2018

Language:

english

File:

PDF, 373 KB

english, 2018

15

Corrigendum to “A revised nomenclature for the human and rodent α-tubulin gene family” [Genomics 90 (2007) 285–289]

Varsha K. Khodiyar, Lois J. Maltais, Barbara J. Ruef, Katherine M.B. Sneddon, Jennifer R. Smith, Mary Shimoyama, Fernando Cabral, Charles Dumontet, Susan K. Dutcher, Robert J. Harvey, Laurence Lafanec

Journal:

Year:

2009

Language:

english

File:

PDF, 90 KB

english, 2009

16

Automated generation of gene summaries at the Alliance of Genome Resources

Kishore, Ranjana, Arnaboldi, Valerio, Van Slyke, Ceri E, Chan, Juancarlos, Nash, Robert S, Urbano, Jose M, Dolan, Mary E, Engel, Stacia R, Shimoyama, Mary, Sternberg, Paul W, Genome Resources, the All

Journal:

Year:

2020

File:

PDF, 1.00 MB

2020

17

A revised nomenclature for the human and rodent α-tubulin gene family

Varsha K. Khodiyar, Lois J. Maltais, Katherine M.B. Sneddon, Jennifer R. Smith, Mary Shimoyama, Fernando Cabral, Charles Dumontet, Susan K. Dutcher, Robert J. Harvey, Laurence Lafanechère, John M. Mur

Journal:

Year:

2007

Language:

english

File:

PDF, 195 KB

english, 2007

18

Hemiaminal-Ether Structure Stabilized by Lanthanide Complex with an Imidazole-Based Schiff Base Ligand

Kachi-Terajima, Chihiro, Shimoyama, Takeru, Ishigami, Takahiro, Ikeda, Mari, Habata, Yoichi

Journal:

Dalton Transactions

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

19

RGD: A comparative genomics platform

Mary Shimoyama,Jennifer R. Smith,Tom Hayman,Stan Laulederkind…

Journal:

Year:

2011

Language:

english

File:

PDF, 2.33 MB

english, 2011

20

[ACM Press the 8th ACM International Conference - Boston, Massachusetts, USA (2017.08.20-2017.08.23)] Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 - Novel Unsupervised Named Entity Recognition Used in Text Annotation Tool (OntoMate) At Rat Genome Database

Ghiasvand, Omid, Shimoyama, Mary

Year:

2017

Language:

english

File:

PDF, 512 KB

english, 2017

21

Tools and strategies for physiological genomics: the Rat Genome Database

Twigger, Simon N., Pasko, Dean, Nie, Jeff, Shimoyama, Mary, Bromberg, Susan, Campbell, Dan, Chen, Jiali, Cruz, Norberto dela, Fan, Chunyu, Foote, Cindy, Harris, Glenn, Hickmann, Brian, Ji, Yuan, Jin,

Journal:

Physiological Genomics

Year:

2005

Language:

english

File:

PDF, 703 KB

english, 2005

22

Quantitative phenotype analysis to identify, validate and compare rat disease models

Zhao, Yiqing, Smith, Jennifer R, Wang, Shur-Jen, Dwinell, Melinda R, Shimoyama, Mary

Journal:

Year:

2019

Language:

english

File:

PDF, 7.59 MB

english, 2019

23

A prioritization analysis of disease association by data-mining of functional annotation of human genes

Takayuki Taniya, Susumu Tanaka, Yumi Yamaguchi-Kabata, Hideki Hanaoka, Chisato Yamasaki, Harutoshi Maekawa, Roberto A. Barrero, Boris Lenhard, Milton W. Datta, Mary Shimoyama, Roger Bumgarner, Ranajit

Journal:

Year:

2012

Language:

english

File:

PDF, 341 KB

english, 2012

24

[Methods in Molecular Biology] Rat Genomics Volume 2018 || Rat Models of Exercise for the Study of Complex Disease

Hayman, G. Thomas, Smith, Jennifer R., Dwinell, Melinda R., Shimoyama, Mary

Year:

2019

Language:

english

File:

PDF, 282 KB

english, 2019

25

Gene Curation Software at the Rat Genome Database (RGD)

Wang, Shur-Jen, Kowalski, George, Smith, Jennifer, Dwinell, Melinda, Nigam, Rajni, Munzenmaier, Diane, De Pons, Jeff, Jacob, Howard, Laulederkind, Stanley, Shimoyama, Mary, Taylor, Brad, Petri, Victor

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 713 KB

english, 2010

26

Functional Domains of Template-Activating Factor-I as a Protein Phosphatase 2A Inhibitor

Shoko Saito, Mary Miyaji-Yamaguchi, Tae Shimoyama, Kyosuke Nagata

Journal:

Biochemical and Biophysical Research Communications

Year:

1999

Language:

english

File:

PDF, 93 KB

english, 1999

27

[International Review of Neurobiology] Bioinformatics of Behavior: Part 2 Volume 104 || Model Organism Databases in Behavioral Neuroscience

Shimoyama, Mary.

Year:

2012

Language:

english

File:

PDF, 1.55 MB

english, 2012

28

Matching the Pace of Genomic Advances Through the Integration of Genomic Education Into High School Health Education

Zusevics, Kaija L., Strong, Kimberly A., Farrell, Michael H., Shimoyama, Mary E.

Journal:

Journal of School Health

Year:

2014

Language:

english

File:

PDF, 484 KB

english, 2014

29

Effects of IL-28B gene polymorphism on response to peginterferon plus ribavirin combination therapy for genotype 2 chronic hepatitis C

Shimoyama, Yu, Nozaki, Akito, Morimoto, Manabu, Moriya, Satoshi, Kondo, Masaaki, Fukuda, Hiroyuki, Numata, Kazushi, Miyajima, Eiji, Oba, Mari S., Taguri, Masataka, Morita, Satoshi, Maeda, Shin, Tanaka

Journal:

Hepatology Research

Year:

2013

Language:

english

File:

PDF, 97 KB

english, 2013

30

Three Ontologies to Define Phenotype Measurement Data

Shimoyama, Mary, Nigam, Rajni, McIntosh, Leslie Sanders, Nagarajan, Rakesh, Rice, Treva, Rao, D. C., Dwinell, Melinda R.

Journal:

Frontiers in Genetics

Year:

2012

Language:

english

File:

PDF, 2.63 MB

english, 2012

31

Erratum to: Multiscale Modeling and Data Integration in the Virtual Physiological Rat Project

Beard, Daniel A., Neal, Maxwell L., Tabesh-Saleki, Nazanin, Thompson, Christopher T., Bassingthwaighte, James B., Shimoyama, Mary, Carlson, Brian E.

Journal:

Annals of Biomedical Engineering

Year:

2012

Language:

english

File:

PDF, 155 KB

english, 2012

32

Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database

Wang, Shur-Jen, Laulederkind, Stanley J. F., Hayman, G. Thomas, Petri, Victoria, Smith, Jennifer R., Tutaj, Marek, Nigam, Rajni, Dwinell, Melinda R., Shimoyama, Mary

Journal:

Physiological Genomics

Year:

2016

Language:

english

File:

PDF, 7.40 MB

english, 2016

33

Using multiple ontologies to integrate complex biological data

Mary Shimoyama, Victoria Petri, Dean Pasko, Susan Bromberg, Wenhua Wu, Jiali Chen, Nataliya Nenasheva, Anne Kwitek, Simon Twigger, Howard Jacob

Journal:

Comparative and Functional Genomics

Year:

2005

Language:

english

File:

PDF, 354 KB

english, 2005

34

Synergistic action of MLL, a TRX protein with template activating factor-I, a histone chaperone

Tae Shimoyama, Kohsuke Kato, Mary Miyaji-Yamaguchi, Kyosuke Nagata

Journal:

Year:

2005

Language:

english

File:

PDF, 289 KB

english, 2005

35

Exploring human disease using the Rat Genome Database

Shimoyama, Mary, Laulederkind, Stanley J. F., De Pons, Jeff, Nigam, Rajni, Smith, Jennifer R., Tutaj, Marek, Petri, Victoria, Hayman, G. Thomas, Wang, Shur-Jen, Ghiasvand, Omid, Thota, Jyothi, Dwinell

Journal:

Disease Models & Mechanisms

Year:

2016

Language:

english

File:

PDF, 2.21 MB

english, 2016

36

[Methods in Molecular Biology] Rat Genomics Volume 2018 ||

Hayman, G. Thomas, Smith, Jennifer R., Dwinell, Melinda R., Shimoyama, Mary

Year:

2019

File:

PDF, 10.54 MB

2019

37

Disease pathways at the Rat Genome Database Pathway Portal: genes in context-a network approach to understanding the molecular mechanisms of disease

Petri, Victoria, Hayman, G, Tutaj, Marek, Smith, Jennifer R, Laulederkind, Stanley, Wang, Shur-Jen, Nigam, Rajni, De Pons, Jeff, Shimoyama, Mary, Dwinell, Melinda R, Worthey, Elizabeth A, Jacob, Howar

Journal:

Year:

2014

Language:

english

File:

PDF, 5.46 MB

english, 2014

38

Disease, Models, Variants and Altered Pathways—Journeying RGD Through the Magnifying Glass

Petri, Victoria, Hayman, G. Thomas, Tutaj, Marek, Smith, Jennifer R., Laulederkind, Stan, Wang, Shur-Jen, Nigam, Rajni, De Pons, Jeff, Shimoyama, Mary, Dwinell, Melinda R.

Journal:

Computational and Structural Biotechnology Journal

Year:

2016

Language:

english

File:

PDF, 7.55 MB

english, 2016

39

[Methods in Molecular Biology] Rat Genomics Volume 2018 || Library Preparation for Multiplexed Reduced Representation Bisulfite Sequencing with a Universal Adapter

Hayman, G. Thomas, Smith, Jennifer R., Dwinell, Melinda R., Shimoyama, Mary

Year:

2019

Language:

english

File:

PDF, 419 KB

english, 2019

40

The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species

Park, Carissa A, Bello, Susan M, Smith, Cynthia L, Hu, Zhi-Liang, Munzenmaier, Diane H, Nigam, Rajni, Smith, Jennifer R, Shimoyama, Mary, Eppig, Janan T, Reecy, James M

Journal:

Journal of Biomedical Semantics

Year:

2013

Language:

english

File:

PDF, 619 KB

english, 2013

41

[ACM Press the 7th ACM International Conference - Seattle, WA, USA (2016.10.02-2016.10.05)] Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '16 - Introducing a Text Annotation Tool (OntoMate), Assisting Curation at Rat Genome Database

Ghiasvand, Omid, Shimoyama, Mary

Year:

2016

Language:

english

File:

PDF, 159 KB

english, 2016

42

10.1071/pp01188

Shibata, Mari, Ohkawa, Hiroshi, Katoh, Hirokazu, Shimoyama, Masaya, Ogawa, Teruo

Journal:

Functional Plant Biology

Year:

2002

Language:

english

File:

PDF, 131 KB

english, 2002

43

Rat Genome and Model Resources

Shimoyama, Mary, Smith, Jennifer R., Bryda, Elizabeth, Kuramoto, Takashi, Saba, Laura, Dwinell, Melinda

Journal:

Year:

2017

Language:

english

File:

PDF, 2.02 MB

english, 2017

44

[Methods in Molecular Biology] Rat Genomics Volume 2018 || Networking in Biology: The Hybrid Rat Diversity Panel

Hayman, G. Thomas, Smith, Jennifer R., Dwinell, Melinda R., Shimoyama, Mary

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

45

Multiple Ontologies for Integrating Complex Phenotype Datasets

Shimoyama, Mary, Dwinell, Melinda, Jacob, Howard

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 238 KB

english, 2009

46

Gene Curation Software at the Rat Genome Database (RGD)

Wang, Shur-Jen, Kowalski, George, Smith, Jennifer, Dwinell, Melinda, Nigam, Rajni, Munzenmaier, Diane, De Pons, Jeff, Jacob, Howard, Laulederkind, Stanley, Shimoyama, Mary, Taylor, Brad, Petri, Victor

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 713 KB

2010

47

Multiple Ontologies for Integrating Complex Phenotype Datasets

Shimoyama, Mary, Dwinell, Melinda, Jacob, Howard

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 238 KB

english, 2009

48

Partial silencing of fucosyltransferase 8 gene expression inhibits proliferation of Ishikawa cells, a cell line of endometrial cancer

Shimoyama, Hana, Shibata, Toshiaki K., Ito, Masahiko, Oda, Tomoaki, Itoh, Toshiya, Mukai, Mari, Matsuya-Ogawa, Madoka, Adachi, Masashi, Murakami, Hirotake, Nakayama, Takeshi, Sugihara, Kazuhiro, Itoh,

Journal:

Biochemistry and Biophysics Reports

Year:

2020

Language:

english

File:

PDF, 2.07 MB

english, 2020

49

Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD

Nigam, Rajni, Munzenmaier, Diane H, Worthey, Elizabeth A, Dwinell, Melinda R, Shimoyama, Mary, Jacob, Howard J

Journal:

Journal of Biomedical Semantics

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

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